• 1) Load existing league tables
  • 2) Build tidy effects vs Placebo
  • 3) Cross-outcome matrix

1) Load existing league tables

League RDS files found
Outcome Path
TST C:/Users/risha/OneDrive/Desktop/NMA/league_TST.rds
SOL C:/Users/risha/OneDrive/Desktop/NMA/league_SOL.rds
WASO C:/Users/risha/OneDrive/Desktop/NMA/league_WASO.rds
PSQI C:/Users/risha/OneDrive/Desktop/NMA/league_PSQI.rds
SE C:/Users/risha/OneDrive/Desktop/NMA/league_SE.rds
## 
## ============ TST ============
## Column names: Placebo Ashwagandha Melatonin-IR Melatonin-PR Tart-cherry Valerian 
## Row names: Placebo Ashwagandha Melatonin-IR Melatonin-PR Tart-cherry Valerian 
## Is Placebo a column? TRUE 
## Is Placebo a row? TRUE 
## 
## First few rows and columns:
##                               Placebo             Ashwagandha
## Placebo                       Placebo   10.61 (0.42 to 23.42)
## Ashwagandha  -10.61 (-23.42 to -0.42)             Ashwagandha
## Melatonin-IR  -11.62 (-26.42 to 0.64) -1.10 (-15.85 to 13.45)
##                        Melatonin-IR
## Placebo      11.62 (-0.64 to 26.42)
## Ashwagandha  1.10 (-13.45 to 15.85)
## Melatonin-IR           Melatonin-IR
## 
## ============ SOL ============
## Column names: Placebo Ashwagandha Melatonin-IR Melatonin-PR Tart-cherry Valerian 
## Row names: Placebo Ashwagandha Melatonin-IR Melatonin-PR Tart-cherry Valerian 
## Is Placebo a column? TRUE 
## Is Placebo a row? TRUE 
## 
## First few rows and columns:
##                           Placebo            Ashwagandha
## Placebo                   Placebo -4.60 (-7.36 to -1.17)
## Ashwagandha   4.60 (1.17 to 7.36)            Ashwagandha
## Melatonin-IR 6.31 (2.27 to 10.83)   1.74 (-2.19 to 6.81)
##                         Melatonin-IR
## Placebo      -6.31 (-10.83 to -2.27)
## Ashwagandha    -1.74 (-6.81 to 2.19)
## Melatonin-IR            Melatonin-IR
## 
## ============ WASO ============
## Column names: Placebo Ashwagandha Melatonin-IR Melatonin-PR Tart-cherry Valerian 
## Row names: Placebo Ashwagandha Melatonin-IR Melatonin-PR Tart-cherry Valerian 
## Is Placebo a column? TRUE 
## Is Placebo a row? TRUE 
## 
## First few rows and columns:
##                            Placebo           Ashwagandha           Melatonin-IR
## Placebo                    Placebo -2.38 (-8.65 to 3.14) -3.05 (-12.30 to 3.57)
## Ashwagandha   2.38 (-3.14 to 8.65)           Ashwagandha  -0.69 (-9.97 to 6.75)
## Melatonin-IR 3.05 (-3.57 to 12.30)  0.69 (-6.75 to 9.97)           Melatonin-IR
## 
## ============ PSQI ============
## Column names: Placebo Ashwagandha Melatonin-IR Melatonin-PR Valerian 
## Row names: Placebo Ashwagandha Melatonin-IR Melatonin-PR Valerian 
## Is Placebo a column? TRUE 
## Is Placebo a row? TRUE 
## 
## First few rows and columns:
##                           Placebo           Ashwagandha          Melatonin-IR
## Placebo                   Placebo -0.80 (-1.96 to 0.41) -0.75 (-1.83 to 1.27)
## Ashwagandha  0.80 (-0.41 to 1.96)           Ashwagandha  0.05 (-1.18 to 2.19)
## Melatonin-IR 0.75 (-1.27 to 1.83) -0.05 (-2.19 to 1.18)          Melatonin-IR
## 
## ============ SE ============
## Column names: Placebo Ashwagandha Melatonin-IR Melatonin-PR Tart-cherry Valerian 
## Row names: Placebo Ashwagandha Melatonin-IR Melatonin-PR Tart-cherry Valerian 
## Is Placebo a column? TRUE 
## Is Placebo a row? TRUE 
## 
## First few rows and columns:
##                             Placebo           Ashwagandha         Melatonin-IR
## Placebo                     Placebo   2.99 (1.18 to 4.54)  3.01 (0.65 to 5.39)
## Ashwagandha  -2.99 (-4.54 to -1.18)           Ashwagandha 0.00 (-2.21 to 2.60)
## Melatonin-IR -3.01 (-5.39 to -0.65) -0.00 (-2.60 to 2.21)         Melatonin-IR

2) Build tidy effects vs Placebo

Effects vs reference by outcome (MD, 95% CrI)
outcome treatment md lCrI uCrI
PSQI Ashwagandha -0.80 -1.96 0.41
PSQI Melatonin-IR -0.75 -1.83 1.27
PSQI Melatonin-PR -0.63 -1.94 0.77
PSQI Valerian -5.27 -7.49 -3.03
SE Ashwagandha 2.99 1.18 4.54
SE Melatonin-IR 3.01 0.65 5.39
SE Melatonin-PR 3.37 -1.43 8.14
SE Tart-cherry 2.47 -2.66 7.70
SE Valerian 0.55 -3.44 4.41
SOL Ashwagandha -4.60 -7.36 -1.17
SOL Melatonin-IR -6.31 -10.83 -2.27
SOL Melatonin-PR -7.92 -13.47 -2.50
SOL Tart-cherry -2.26 -13.65 9.08
SOL Valerian 1.57 -3.76 7.39
TST Ashwagandha 10.61 0.42 23.42
TST Melatonin-IR 11.62 -0.64 26.42
TST Melatonin-PR 6.96 -8.04 21.65
TST Tart-cherry 28.93 -3.89 62.94
TST Valerian 0.41 -18.69 19.86
WASO Ashwagandha -2.38 -8.65 3.14
WASO Melatonin-IR -3.05 -12.30 3.57
WASO Melatonin-PR 5.30 -10.98 21.15
WASO Tart-cherry -11.84 -39.98 16.41
WASO Valerian -5.18 -14.69 6.39

3) Cross-outcome matrix

## TST significance check:
## # A tibble: 5 × 7
##   treatment       md   lCrI  uCrI sig   sig_check crosses_zero
##   <chr>        <dbl>  <dbl> <dbl> <lgl> <lgl>     <lgl>       
## 1 Ashwagandha  10.6    0.42  23.4 TRUE  TRUE      FALSE       
## 2 Melatonin-IR 11.6   -0.64  26.4 FALSE FALSE     TRUE        
## 3 Melatonin-PR  6.96  -8.04  21.6 FALSE FALSE     TRUE        
## 4 Tart-cherry  28.9   -3.89  62.9 FALSE FALSE     TRUE        
## 5 Valerian      0.41 -18.7   19.9 FALSE FALSE     TRUE

## 
## === ACTUALLY SIGNIFICANT EFFECTS ===
## # A tibble: 7 × 5
##   treatment    outcome    md   lCrI  uCrI
##   <chr>        <chr>   <dbl>  <dbl> <dbl>
## 1 Valerian     PSQI    -5.27  -7.49 -3.03
## 2 Ashwagandha  SE       2.99   1.18  4.54
## 3 Melatonin-IR SE       3.01   0.65  5.39
## 4 Ashwagandha  SOL     -4.6   -7.36 -1.17
## 5 Melatonin-IR SOL     -6.31 -10.8  -2.27
## 6 Melatonin-PR SOL     -7.92 -13.5  -2.5 
## 7 Ashwagandha  TST     10.6    0.42 23.4
## 
## === CLINICALLY MEANINGFUL (Exceeds MCID) ===
## # A tibble: 2 × 4
##   treatment   outcome    md  mcid
##   <chr>       <chr>   <dbl> <dbl>
## 1 Valerian    PSQI    -5.27   4.4
## 2 Tart-cherry TST     28.9   15